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HI,
I've noticed that the clocks have different symbols in the Top Design of PSoC Creator for PSoC 4 CY8C4125PVI482.
I'd like to mention that the clock on the left (in image, sorry i do not know how to embed an image, apologies) is an Existing clock and the Clock on the left is a NEW clock - this option is available when configuring the clock.
Is that why the colour of the wave inside is GREEN and WHITE, respectively?